J6_9Y4G_001
3D structure
- PDB id
- 9Y4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUACCGG*CGUC
- Length
- 42 nucleotides
- Bulged bases
- 9Y4G|1|A5|A|66, 9Y4G|1|A5|C|340, 9Y4G|1|A8|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Y4G|1|A5|G|21
9Y4G|1|A5|G|22
9Y4G|1|A5|C|23
9Y4G|1|A5|G|24
9Y4G|1|A5|A|25
9Y4G|1|A5|C|26
*
9Y4G|1|A5|G|57
9Y4G|1|A5|G|58
9Y4G|1|A5|A|59
9Y4G|1|A5|G|60
9Y4G|1|A5|A|61
9Y4G|1|A5|A|62
9Y4G|1|A5|G|63
9Y4G|1|A5|A|64
9Y4G|1|A5|A|65
9Y4G|1|A5|A|66
9Y4G|1|A5|C|67
*
9Y4G|1|A5|G|74
9Y4G|1|A5|G|75
9Y4G|1|A5|A|76
9Y4G|1|A5|U|77
9Y4G|1|A5|U|78
*
9Y4G|1|A5|A|105
9Y4G|1|A5|A|106
9Y4G|1|A5|G|107
9Y4G|1|A5|A|108
9Y4G|1|A5|G|109
*
9Y4G|1|A5|C|332
9Y4G|1|A5|U|333
9Y4G|1|A5|A|334
9Y4G|1|A5|A|335
9Y4G|1|A5|A|336
9Y4G|1|A5|U|337
9Y4G|1|A5|A|338
9Y4G|1|A5|C|339
9Y4G|1|A5|C|340
9Y4G|1|A5|G|341
9Y4G|1|A5|G|342
*
9Y4G|1|A8|C|32
9Y4G|1|A8|G|33
9Y4G|1|A8|U|34
9Y4G|1|A8|C|35
Current chains
- Chain A5
- LSU-alpha rRNA
- Chain A8
- 5.8S rRNA (157-MER)
Nearby chains
- Chain A6
- Large subunit ribosomal RNA; LSU rRNA
- Chain CC
- 60S ribosomal protein L4
- Chain CL
- 60S ribosomal protein L13
- Chain CN
- 60S ribosomal protein L15
- Chain Ch
- 60S ribosomal protein L35
- Chain Ci
- 60S ribosomal protein L36
- Chain Cj
- 60S ribosomal protein L37
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