J6_9Y79_001

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9Y79|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y79|1|a|G|45
9Y79|1|a|G|46
*
9Y79|1|a|C|179
9Y79|1|a|G|180
9Y79|1|a|A|181
9Y79|1|a|A|182
9Y79|1|a|C|183
*
9Y79|1|a|G|214
9Y79|1|a|G|215
9Y79|1|a|A|216
9Y79|1|a|A|217
9Y79|1|a|A|218
9Y79|1|a|A|219
9Y79|1|a|G|220
9Y79|1|a|A|221
9Y79|1|a|A|222
9Y79|1|a|A|223
9Y79|1|a|U|224
*
9Y79|1|a|A|231
9Y79|1|a|G|232
9Y79|1|a|A|233
9Y79|1|a|U|234
9Y79|1|a|U|235
*
9Y79|1|a|A|262
9Y79|1|a|G|263
9Y79|1|a|C|264
9Y79|1|a|A|265
9Y79|1|a|G|266
*
9Y79|1|a|C|426
9Y79|1|a|U|427
9Y79|1|a|A|428
9Y79|1|a|A|429
9Y79|1|a|A|430
9Y79|1|a|U|431
9Y79|1|a|A|432
9Y79|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34