J6_9YDB_001
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 9YDB|1|A|A|67, 9YDB|1|A|U|329, 9YDB|1|C|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|A|G|22
9YDB|1|A|A|23
9YDB|1|A|G|24
9YDB|1|A|U|25
9YDB|1|A|A|26
9YDB|1|A|C|27
*
9YDB|1|A|G|58
9YDB|1|A|G|59
9YDB|1|A|A|60
9YDB|1|A|A|61
9YDB|1|A|A|62
9YDB|1|A|A|63
9YDB|1|A|G|64
9YDB|1|A|A|65
9YDB|1|A|A|66
9YDB|1|A|A|67
9YDB|1|A|C|68
*
9YDB|1|A|G|75
9YDB|1|A|G|76
9YDB|1|A|A|77
9YDB|1|A|U|78
9YDB|1|A|U|79
*
9YDB|1|A|A|106
9YDB|1|A|A|107
9YDB|1|A|A|108
9YDB|1|A|A|109
9YDB|1|A|G|110
*
9YDB|1|A|C|321
9YDB|1|A|U|322
9YDB|1|A|A|323
9YDB|1|A|A|324
9YDB|1|A|A|325
9YDB|1|A|U|326
9YDB|1|A|A|327
9YDB|1|A|U|328
9YDB|1|A|U|329
9YDB|1|A|G|330
9YDB|1|A|G|331
*
9YDB|1|C|C|32
9YDB|1|C|A|33
9YDB|1|C|U|34
9YDB|1|C|C|35
Current chains
- Chain A
- 25S RNA
- Chain C
- 8S RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain LN
- 60S ribosomal protein L13-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain Lj
- 60S ribosomal protein L35-A
- Chain Lk
- 60S ribosomal protein L36-A
- Chain Ll
- 60S ribosomal protein L37-A
Coloring options: