Loop J6_9YDB

3D structure

PDB id: 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
Description: Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å

Loop

Sequence: UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
Length: 38 nucleotides
Bulged bases: 9YDB|1|A|G|2418, 9YDB|1|A|C|2760, 9YDB|1|A|A|2799, 9YDB|1|A|A|2801, 9YDB|1|A|A|2802
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9YDB|1|A|U|2416
9YDB|1|A|U|2417
9YDB|1|A|G|2418
9YDB|1|A|A|2419
*
9YDB|1|A|U|2611
9YDB|1|A|U|2612
9YDB|1|A|U|2613
9YDB|1|A|G|2614
*
9YDB|1|A|C|2627
9YDB|1|A|A|2628
*
9YDB|1|A|U|2650
9YDB|1|A|G|2651
9YDB|1|A|U|2652
9YDB|1|A|C|2653
*
9YDB|1|A|G|2754
9YDB|1|A|C|2755
9YDB|1|A|C|2756
9YDB|1|A|U|2757
9YDB|1|A|A|2758
9YDB|1|A|U|2759
9YDB|1|A|C|2760
9YDB|1|A|G|2761
9YDB|1|A|A|2762
9YDB|1|A|U|2763
9YDB|1|A|C|2764
9YDB|1|A|C|2765
*
9YDB|1|A|G|2793
9YDB|1|A|G|2794
9YDB|1|A|U|2795
9YDB|1|A|G|2796
9YDB|1|A|C|2797
9YDB|1|A|C|2798
9YDB|1|A|A|2799
9YDB|1|A|G|2800
9YDB|1|A|A|2801
9YDB|1|A|A|2802
9YDB|1|A|A|2803
9YDB|1|A|A|2804

Current chains

Chain A: 25S RNA

Nearby chains

Chain LD: 60S ribosomal protein L2-A
Chain LP: 60S ribosomal protein L15-A
Chain LS: 60S ribosomal protein L18-A
Chain LV: 60S ribosomal protein L21-A
Chain Lc: 60S ribosomal protein L28
Chain Ld: 60S ribosomal protein L29
Chain Lq: 60S ribosomal protein L42-A
Chain V: 60S ribosomal export protein NMD3

J6_9YDB_002