J7_11GG_001

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

AGCGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GGCUU

Length

40 nucleotides

Bulged bases

11GG|1|I|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11GG|1|I|A|6
11GG|1|I|G|7
11GG|1|I|C|8
11GG|1|I|G|9
11GG|1|I|A|10
11GG|1|I|C|11
11GG|1|I|U|12
11GG|1|I|A|13
11GG|1|I|A|14
11GG|1|I|G|15
*
11GG|1|I|U|525
11GG|1|I|A|526
11GG|1|I|C|527
11GG|1|I|A|528
11GG|1|I|A|529
11GG|1|I|G|530
11GG|1|I|C|531
*
11GG|1|I|G|2018
11GG|1|I|A|2019
11GG|1|I|A|2020
11GG|1|I|C|2021
11GG|1|I|U|2022
11GG|1|I|C|2023
*
11GG|1|I|G|2040
11GG|1|I|U|2041
11GG|1|I|A|2042
11GG|1|I|C|2043
*
11GG|1|I|G|2625
11GG|1|I|C|2626
11GG|1|I|G|2627
11GG|1|I|C|2628
11GG|1|I|U|2629
11GG|1|I|G|2630
*
11GG|1|I|C|2788
11GG|1|I|C|2789
*
11GG|1|I|G|2894
11GG|1|I|G|2895
11GG|1|I|C|2896
11GG|1|I|U|2897
11GG|1|I|U|2898

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein uL22

Chain L

Large ribosomal subunit protein uL3

Chain R

Large ribosomal subunit protein uL13

Chain Y

50S ribosomal protein L20

Chain i

50S ribosomal protein L32