J7_11IQ_001

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

11IQ|1|28|G|1854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11IQ|1|28|C|1666
11IQ|1|28|A|1667
11IQ|1|28|A|1668
11IQ|1|28|A|1669
11IQ|1|28|G|1670
11IQ|1|28|U|1671
*
11IQ|1|28|A|1684
11IQ|1|28|G|1685
*
11IQ|1|28|U|1852
11IQ|1|28|G|1853
11IQ|1|28|G|1854
11IQ|1|28|G|1855
*
11IQ|1|28|C|1879
11IQ|1|28|G|1880
11IQ|1|28|C|1881
11IQ|1|28|U|1882
11IQ|1|28|G|1883
11IQ|1|28|C|1884
*
11IQ|1|28|G|1895
11IQ|1|28|A|1896
11IQ|1|28|A|1897
11IQ|1|28|C|1898
11IQ|1|28|G|1899
*
11IQ|1|28|C|2077
11IQ|1|28|C|2078
*
11IQ|1|28|G|2278
11IQ|1|28|A|2279
11IQ|1|28|G|2280
11IQ|1|28|U|2281
11IQ|1|28|A|2282
11IQ|1|28|G|2283

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 13

Large ribosomal subunit protein eL13

Chain 21

60S ribosomal protein L21

Chain 29

Large ribosomal subunit protein eL29

Chain 32

Large ribosomal subunit protein eL32

Chain 5

5S ribosomal RNA; 5S rRNA

Chain L4

60S ribosomal protein L4

Chain L7

60S ribosomal protein L7

Chain Q

Large ribosomal subunit protein eL18

Chain dd

60S ribosomal protein L27a

Chain ee

Large ribosomal subunit protein eL33