J7_11JJ_001
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 11JJ|1|28|G|1854
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11JJ|1|28|C|1666
11JJ|1|28|A|1667
11JJ|1|28|A|1668
11JJ|1|28|A|1669
11JJ|1|28|G|1670
11JJ|1|28|U|1671
*
11JJ|1|28|A|1684
11JJ|1|28|G|1685
*
11JJ|1|28|U|1852
11JJ|1|28|G|1853
11JJ|1|28|G|1854
11JJ|1|28|G|1855
*
11JJ|1|28|C|1879
11JJ|1|28|G|1880
11JJ|1|28|C|1881
11JJ|1|28|U|1882
11JJ|1|28|G|1883
11JJ|1|28|C|1884
*
11JJ|1|28|G|1895
11JJ|1|28|A|1896
11JJ|1|28|A|1897
11JJ|1|28|C|1898
11JJ|1|28|G|1899
*
11JJ|1|28|C|2077
11JJ|1|28|C|2078
*
11JJ|1|28|G|2278
11JJ|1|28|A|2279
11JJ|1|28|G|2280
11JJ|1|28|U|2281
11JJ|1|28|A|2282
11JJ|1|28|G|2283
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 13
- Large ribosomal subunit protein eL13
- Chain 21
- 60S ribosomal protein L21
- Chain 29
- Large ribosomal subunit protein eL29
- Chain 32
- Large ribosomal subunit protein eL32
- Chain 6
- 5S ribosomal RNA; 5S rRNA
- Chain L4
- 60S ribosomal protein L4
- Chain L7
- 60S ribosomal protein L7
- Chain Q
- Large ribosomal subunit protein eL18
- Chain dd
- 60S ribosomal protein L27a
- Chain ee
- Large ribosomal subunit protein eL33
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