J7_1J5A_001

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAAUG*CAGCC*GAGUGAG*CGAGAG*CAGACCAU*AUGGAUUC*GUCUGGUAG

Length

50 nucleotides

Bulged bases

1J5A|1|A|A|956, 1J5A|1|A|U|1172, 1J5A|1|A|U|1199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1J5A|1|A|C|830
1J5A|1|A|G|831
1J5A|1|A|A|832
1J5A|1|A|A|833
1J5A|1|A|A|834
1J5A|1|A|U|835
1J5A|1|A|G|836
*
1J5A|1|A|C|847
1J5A|1|A|A|848
1J5A|1|A|G|849
1J5A|1|A|C|850
1J5A|1|A|C|851
*
1J5A|1|A|G|951
1J5A|1|A|A|952
1J5A|1|A|G|953
1J5A|1|A|U|954
1J5A|1|A|G|955
1J5A|1|A|A|956
1J5A|1|A|G|957
*
1J5A|1|A|C|982
1J5A|1|A|G|983
1J5A|1|A|A|984
1J5A|1|A|G|985
1J5A|1|A|A|986
1J5A|1|A|G|987
*
1J5A|1|A|C|998
1J5A|1|A|A|999
1J5A|1|A|G|1000
1J5A|1|A|A|1001
1J5A|1|A|C|1002
1J5A|1|A|C|1003
1J5A|1|A|A|1004
1J5A|1|A|U|1005
*
1J5A|1|A|A|1171
1J5A|1|A|U|1172
1J5A|1|A|G|1173
1J5A|1|A|G|1174
1J5A|1|A|A|1175
1J5A|1|A|U|1176
1J5A|1|A|U|1177
1J5A|1|A|C|1178
*
1J5A|1|A|G|1196
1J5A|1|A|U|1197
1J5A|1|A|C|1198
1J5A|1|A|U|1199
1J5A|1|A|G|1200
1J5A|1|A|G|1201
1J5A|1|A|U|1202
1J5A|1|A|A|1203
1J5A|1|A|G|1204

Current chains

Chain A

23S RRNA

Nearby chains