Loop J7_1NKW

General information

3D structure

PDB id: 1NKW (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å

Loop

Sequence: CCGAAAU*AG*UGAGGC*GCCGAGAG*CAGAC*GAUUCA*UGUCUGGUAGG
Length: 45 nucleotides
Bulged bases: 1NKW|1|0|A|956, 1NKW|1|0|U|1199
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

1NKW|1|0|C|829
1NKW|1|0|C|830
1NKW|1|0|G|831
1NKW|1|0|A|832
1NKW|1|0|A|833
1NKW|1|0|A|834
1NKW|1|0|U|835
*
1NKW|1|0|A|848
1NKW|1|0|G|849
*
1NKW|1|0|U|954
1NKW|1|0|G|955
1NKW|1|0|A|956
1NKW|1|0|G|957
1NKW|1|0|G|958
1NKW|1|0|C|959
*
1NKW|1|0|G|980
1NKW|1|0|C|981
1NKW|1|0|C|982
1NKW|1|0|G|983
1NKW|1|0|A|984
1NKW|1|0|G|985
1NKW|1|0|A|986
1NKW|1|0|G|987
*
1NKW|1|0|C|998
1NKW|1|0|A|999
1NKW|1|0|G|1000
1NKW|1|0|A|1001
1NKW|1|0|C|1002
*
1NKW|1|0|G|1174
1NKW|1|0|A|1175
1NKW|1|0|U|1176
1NKW|1|0|U|1177
1NKW|1|0|C|1178
1NKW|1|0|A|1179
*
1NKW|1|0|U|1195
1NKW|1|0|G|1196
1NKW|1|0|U|1197
1NKW|1|0|C|1198
1NKW|1|0|U|1199
1NKW|1|0|G|1200
1NKW|1|0|G|1201
1NKW|1|0|U|1202
1NKW|1|0|A|1203
1NKW|1|0|G|1204
1NKW|1|0|G|1205

Current chains

Chain 0: 23S ribosomal RNA

Nearby chains

Chain 3: 50S ribosomal protein L35
Chain 9: 5S ribosomal RNA; 5S rRNA
Chain J: 50S ribosomal protein L15
Chain O: 50S ribosomal protein L20
Chain P: 50S ribosomal protein L21
Chain X: 50S ribosomal protein L30

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Coloring options:
Nucleotide numbers

J7_1NKW_001