J7_1VWW_001

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCGAAGUUUCC*GGAUAGCUGGC*GCCUAGUGGGCCACU*ACUGGCGCUGCG*CGAACGCC*GGCCGUC*GACGAGUAGG

Length

74 nucleotides

Bulged bases

1VWW|1|5|G|2278

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|C|1665
1VWW|1|5|C|1666
1VWW|1|5|G|1667
1VWW|1|5|A|1668
1VWW|1|5|A|1669
1VWW|1|5|G|1670
1VWW|1|5|U|1671
1VWW|1|5|U|1672
1VWW|1|5|U|1673
1VWW|1|5|C|1674
1VWW|1|5|C|1675
*
1VWW|1|5|G|1680
1VWW|1|5|G|1681
1VWW|1|5|A|1682
1VWW|1|5|U|1683
1VWW|1|5|A|1684
1VWW|1|5|G|1685
1VWW|1|5|C|1686
1VWW|1|5|U|1687
1VWW|1|5|G|1688
1VWW|1|5|G|1689
1VWW|1|5|C|1690
*
1VWW|1|5|G|1846
1VWW|1|5|C|1847
1VWW|1|5|C|1848
1VWW|1|5|U|1849
1VWW|1|5|A|1850
1VWW|1|5|G|1851
1VWW|1|5|U|1852
1VWW|1|5|G|1853
1VWW|1|5|G|1854
1VWW|1|5|G|1855
1VWW|1|5|C|1856
1VWW|1|5|C|1857
1VWW|1|5|A|1858
1VWW|1|5|C|1859
1VWW|1|5|U|1860
*
1VWW|1|5|A|1874
1VWW|1|5|C|1875
1VWW|1|5|U|1876
1VWW|1|5|G|1877
1VWW|1|5|G|1878
1VWW|1|5|C|1879
1VWW|1|5|G|1880
1VWW|1|5|C|1881
1VWW|1|5|U|1882
1VWW|1|5|G|1883
1VWW|1|5|C|1884
1VWW|1|5|G|1885
*
1VWW|1|5|C|1894
1VWW|1|5|G|1895
1VWW|1|5|A|1896
1VWW|1|5|A|1897
1VWW|1|5|C|1898
1VWW|1|5|G|1899
1VWW|1|5|C|1900
1VWW|1|5|C|1901
*
1VWW|1|5|G|2075
1VWW|1|5|G|2076
1VWW|1|5|C|2077
1VWW|1|5|C|2078
1VWW|1|5|G|2079
1VWW|1|5|U|2080
1VWW|1|5|C|2081
*
1VWW|1|5|G|2275
1VWW|1|5|A|2276
1VWW|1|5|C|2277
1VWW|1|5|G|2278
1VWW|1|5|A|2279
1VWW|1|5|G|2280
1VWW|1|5|U|2281
1VWW|1|5|A|2282
1VWW|1|5|G|2283
1VWW|1|5|G|2284

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA