J7_1VX6_001

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAGA*UCG*UGGG*CGAUGA*UAACG*CC*GAGUAG

Length

33 nucleotides

Bulged bases

1VX6|1|A|G|1244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX6|1|A|C|1068
1VX6|1|A|G|1069
1VX6|1|A|A|1070
1VX6|1|A|A|1071
1VX6|1|A|A|1072
1VX6|1|A|G|1073
1VX6|1|A|A|1074
*
1VX6|1|A|U|1085
1VX6|1|A|C|1086
1VX6|1|A|G|1087
*
1VX6|1|A|U|1242
1VX6|1|A|G|1243
1VX6|1|A|G|1244
1VX6|1|A|G|1245
*
1VX6|1|A|C|1269
1VX6|1|A|G|1270
1VX6|1|A|A|1271
1VX6|1|A|U|1272
1VX6|1|A|G|1273
1VX6|1|A|A|1274
*
1VX6|1|A|U|1285
1VX6|1|A|A|1286
1VX6|1|A|A|1287
1VX6|1|A|C|1288
1VX6|1|A|G|1289
*
1VX6|1|A|C|1466
1VX6|1|A|C|1467
*
1VX6|1|A|G|1514
1VX6|1|A|A|1515
1VX6|1|A|G|1516
1VX6|1|A|U|1517
1VX6|1|A|A|1518
1VX6|1|A|G|1519

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA