J7_1VY7_001
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
- Length
- 32 nucleotides
- Bulged bases
- 1VY7|1|BA|A|945, 1VY7|1|BA|C|975
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1VY7|1|BA|C|817
1VY7|1|BA|G|818
1VY7|1|BA|A|819
1VY7|1|BA|A|820
1VY7|1|BA|A|821
1VY7|1|BA|U|822
*
1VY7|1|BA|A|835
1VY7|1|BA|G|836
*
1VY7|1|BA|U|943
1VY7|1|BA|G|944
1VY7|1|BA|A|945
1VY7|1|BA|G|946
*
1VY7|1|BA|C|971
1VY7|1|BA|G|972
1VY7|1|BA|A|973
1VY7|1|BA|G|974
1VY7|1|BA|C|975
1VY7|1|BA|G|975|||A
1VY7|1|BA|C|976
*
1VY7|1|BA|G|987
1VY7|1|BA|A|988
1VY7|1|BA|G|989
1VY7|1|BA|A|990
1VY7|1|BA|C|991
*
1VY7|1|BA|G|1163
1VY7|1|BA|G|1164
*
1VY7|1|BA|C|1185
1VY7|1|BA|G|1186
1VY7|1|BA|G|1187
1VY7|1|BA|U|1188
1VY7|1|BA|A|1189
1VY7|1|BA|G|1190
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain B3
- 50S ribosomal protein L30
- Chain B8
- 50S ribosomal protein L35
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain BP
- 50S ribosomal protein L15
- Chain BU
- 50S ribosomal protein L20
- Chain BV
- 50S ribosomal protein L21
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