J7_1VY7_001

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

1VY7|1|BA|A|945, 1VY7|1|BA|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY7|1|BA|C|817
1VY7|1|BA|G|818
1VY7|1|BA|A|819
1VY7|1|BA|A|820
1VY7|1|BA|A|821
1VY7|1|BA|U|822
*
1VY7|1|BA|A|835
1VY7|1|BA|G|836
*
1VY7|1|BA|U|943
1VY7|1|BA|G|944
1VY7|1|BA|A|945
1VY7|1|BA|G|946
*
1VY7|1|BA|C|971
1VY7|1|BA|G|972
1VY7|1|BA|A|973
1VY7|1|BA|G|974
1VY7|1|BA|C|975
1VY7|1|BA|G|975|||A
1VY7|1|BA|C|976
*
1VY7|1|BA|G|987
1VY7|1|BA|A|988
1VY7|1|BA|G|989
1VY7|1|BA|A|990
1VY7|1|BA|C|991
*
1VY7|1|BA|G|1163
1VY7|1|BA|G|1164
*
1VY7|1|BA|C|1185
1VY7|1|BA|G|1186
1VY7|1|BA|G|1187
1VY7|1|BA|U|1188
1VY7|1|BA|A|1189
1VY7|1|BA|G|1190

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L30

Chain B8

50S ribosomal protein L35

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BP

50S ribosomal protein L15

Chain BU

50S ribosomal protein L20

Chain BV

50S ribosomal protein L21