J7_28LN_001
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CG(OMC)UGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 28LN|1|B5|G|1852, 28LN|1|B5|G|1853
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
28LN|1|B5|C|1665
28LN|1|B5|G|1666
28LN|1|B5|A|1667
28LN|1|B5|A|1668
28LN|1|B5|G|1669
28LN|1|B5|U|1670
*
28LN|1|B5|A|1683
28LN|1|B5|G|1684
*
28LN|1|B5|U|1851
28LN|1|B5|G|1852
28LN|1|B5|G|1853
28LN|1|B5|G|1854
*
28LN|1|B5|C|1878
28LN|1|B5|G|1879
28LN|1|B5|OMC|1880
28LN|1|B5|U|1881
28LN|1|B5|G|1882
28LN|1|B5|C|1883
*
28LN|1|B5|G|1894
28LN|1|B5|A|1895
28LN|1|B5|A|1896
28LN|1|B5|C|1897
28LN|1|B5|G|1898
*
28LN|1|B5|C|2076
28LN|1|B5|C|2077
*
28LN|1|B5|G|2277
28LN|1|B5|A|2278
28LN|1|B5|G|2279
28LN|1|B5|U|2280
28LN|1|B5|A|2281
28LN|1|B5|G|2282
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BC
- 60S ribosomal protein L4
- Chain BF
- Large ribosomal subunit protein uL30
- Chain BL
- 60S ribosomal protein L13
- Chain BQ
- 60S ribosomal protein L18
- Chain BT
- 60S ribosomal protein L21
- Chain Ba
- Large ribosomal subunit protein uL15
- Chain Bb
- Large ribosomal subunit protein eL29
- Chain Be
- 60S ribosomal protein L32
- Chain Bf
- 60S ribosomal protein L35a
Coloring options: