J7_2AAR_001

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCGAAAU*AG*UGAG*CGAGAG*CAGAC*GAUUCAA*UUGUCUGGUAGG

Length

43 nucleotides

Bulged bases

2AAR|1|0|G|955, 2AAR|1|0|A|956, 2AAR|1|0|U|1199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2AAR|1|0|C|829
2AAR|1|0|C|830
2AAR|1|0|G|831
2AAR|1|0|A|832
2AAR|1|0|A|833
2AAR|1|0|A|834
2AAR|1|0|U|835
*
2AAR|1|0|A|848
2AAR|1|0|G|849
*
2AAR|1|0|U|954
2AAR|1|0|G|955
2AAR|1|0|A|956
2AAR|1|0|G|957
*
2AAR|1|0|C|982
2AAR|1|0|G|983
2AAR|1|0|A|984
2AAR|1|0|G|985
2AAR|1|0|A|986
2AAR|1|0|G|987
*
2AAR|1|0|C|998
2AAR|1|0|A|999
2AAR|1|0|G|1000
2AAR|1|0|A|1001
2AAR|1|0|C|1002
*
2AAR|1|0|G|1174
2AAR|1|0|A|1175
2AAR|1|0|U|1176
2AAR|1|0|U|1177
2AAR|1|0|C|1178
2AAR|1|0|A|1179
2AAR|1|0|A|1180
*
2AAR|1|0|U|1194
2AAR|1|0|U|1195
2AAR|1|0|G|1196
2AAR|1|0|U|1197
2AAR|1|0|C|1198
2AAR|1|0|U|1199
2AAR|1|0|G|1200
2AAR|1|0|G|1201
2AAR|1|0|U|1202
2AAR|1|0|A|1203
2AAR|1|0|G|1204
2AAR|1|0|G|1205

Current chains

Chain 0

23S ribosomal RNA

Nearby chains