3D structure

PDB id
2J28 (explore in PDB, NAKB, or RNA 3D Hub)
Description
MODEL OF E. COLI SRP BOUND TO 70S RNCS
Experimental method
ELECTRON MICROSCOPY
Resolution
9.5 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
2J28|1|B|A|10, 2J28|1|B|C|11, 2J28|1|B|C|2021
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

2J28|1|B|C|8
2J28|1|B|G|9
2J28|1|B|A|10
2J28|1|B|C|11
2J28|1|B|U|12
2J28|1|B|A|13
2J28|1|B|A|14
2J28|1|B|G|15
*
2J28|1|B|U|525
2J28|1|B|A|526
2J28|1|B|C|527
2J28|1|B|A|528
2J28|1|B|A|529
2J28|1|B|G|530
2J28|1|B|C|531
*
2J28|1|B|G|2018
2J28|1|B|A|2019
2J28|1|B|A|2020
2J28|1|B|C|2021
2J28|1|B|U|2022
2J28|1|B|C|2023
*
2J28|1|B|G|2040
2J28|1|B|U|2041
2J28|1|B|A|2042
2J28|1|B|C|2043
*
2J28|1|B|G|2625
2J28|1|B|C|2626
2J28|1|B|G|2627
2J28|1|B|C|2628
2J28|1|B|U|2629
2J28|1|B|G|2630
*
2J28|1|B|C|2788
2J28|1|B|C|2789
*
2J28|1|B|G|2894
2J28|1|B|G|2895

Current chains

Chain B
23S RIBOSOMAL RNA

Nearby chains

Chain 0
50S RIBOSOMAL PROTEIN L32
Chain D
50S RIBOSOMAL PROTEIN L3
Chain J
50S RIBOSOMAL PROTEIN L13
Chain Q
50S RIBOSOMAL PROTEIN L20
Chain S
50S RIBOSOMAL PROTEIN L22

Coloring options:

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