3D structure

PDB id
2J28 (explore in PDB, NAKB, or RNA 3D Hub)
Description
MODEL OF E. COLI SRP BOUND TO 70S RNCS
Experimental method
ELECTRON MICROSCOPY
Resolution
9.5 Å

Loop

Sequence
CGAAAG*CGC*GACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
33 nucleotides
Bulged bases
2J28|1|B|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

2J28|1|B|C|817
2J28|1|B|G|818
2J28|1|B|A|819
2J28|1|B|A|820
2J28|1|B|A|821
2J28|1|B|G|822
*
2J28|1|B|C|835
2J28|1|B|G|836
2J28|1|B|C|837
*
2J28|1|B|G|942
2J28|1|B|A|943
2J28|1|B|C|944
2J28|1|B|A|945
2J28|1|B|C|946
*
2J28|1|B|G|971
2J28|1|B|A|972
2J28|1|B|A|973
2J28|1|B|G|974
2J28|1|B|A|975
2J28|1|B|G|976
*
2J28|1|B|C|987
2J28|1|B|A|988
2J28|1|B|G|989
2J28|1|B|A|990
2J28|1|B|C|991
*
2J28|1|B|G|1163
2J28|1|B|C|1164
*
2J28|1|B|G|1185
2J28|1|B|G|1186
2J28|1|B|G|1187
2J28|1|B|U|1188
2J28|1|B|A|1189
2J28|1|B|G|1190

Current chains

Chain B
23S RIBOSOMAL RNA

Nearby chains

Chain 3
50S RIBOSOMAL PROTEIN L35
Chain A
5S ribosomal RNA; 5S rRNA
Chain L
50S RIBOSOMAL PROTEIN L15
Chain Q
50S RIBOSOMAL PROTEIN L20
Chain R
50S RIBOSOMAL PROTEIN L21
Chain Y
50S RIBOSOMAL PROTEIN L30

Coloring options:

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