J7_2OGO_001

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CGAAAU*AGC*GUGAG*CGAGAG*CAGAC*GAUUCAA*UUGUCUGGUAG

Length

43 nucleotides

Bulged bases

2OGO|1|0|A|956, 2OGO|1|0|U|1199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OGO|1|0|C|830
2OGO|1|0|G|831
2OGO|1|0|A|832
2OGO|1|0|A|833
2OGO|1|0|A|834
2OGO|1|0|U|835
*
2OGO|1|0|A|848
2OGO|1|0|G|849
2OGO|1|0|C|850
*
2OGO|1|0|G|953
2OGO|1|0|U|954
2OGO|1|0|G|955
2OGO|1|0|A|956
2OGO|1|0|G|957
*
2OGO|1|0|C|982
2OGO|1|0|G|983
2OGO|1|0|A|984
2OGO|1|0|G|985
2OGO|1|0|A|986
2OGO|1|0|G|987
*
2OGO|1|0|C|998
2OGO|1|0|A|999
2OGO|1|0|G|1000
2OGO|1|0|A|1001
2OGO|1|0|C|1002
*
2OGO|1|0|G|1174
2OGO|1|0|A|1175
2OGO|1|0|U|1176
2OGO|1|0|U|1177
2OGO|1|0|C|1178
2OGO|1|0|A|1179
2OGO|1|0|A|1180
*
2OGO|1|0|U|1194
2OGO|1|0|U|1195
2OGO|1|0|G|1196
2OGO|1|0|U|1197
2OGO|1|0|C|1198
2OGO|1|0|U|1199
2OGO|1|0|G|1200
2OGO|1|0|G|1201
2OGO|1|0|U|1202
2OGO|1|0|A|1203
2OGO|1|0|G|1204

Current chains

Chain 0

23S ribosomal RNA

Nearby chains