J7_3J6X_001
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 3J6X|1|2S|G|1116
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J6X|1|2S|C|949
3J6X|1|2S|G|950
3J6X|1|2S|A|951
3J6X|1|2S|A|952
3J6X|1|2S|G|953
3J6X|1|2S|U|954
*
3J6X|1|2S|A|967
3J6X|1|2S|G|968
*
3J6X|1|2S|U|1114
3J6X|1|2S|G|1115
3J6X|1|2S|G|1116
3J6X|1|2S|G|1117
*
3J6X|1|2S|C|1141
3J6X|1|2S|G|1142
3J6X|1|2S|A|1143
3J6X|1|2S|U|1144
3J6X|1|2S|G|1145
3J6X|1|2S|C|1146
*
3J6X|1|2S|G|1157
3J6X|1|2S|A|1158
3J6X|1|2S|A|1159
3J6X|1|2S|C|1160
3J6X|1|2S|G|1161
*
3J6X|1|2S|C|1338
3J6X|1|2S|C|1339
*
3J6X|1|2S|G|1365
3J6X|1|2S|A|1366
3J6X|1|2S|G|1367
3J6X|1|2S|U|1368
3J6X|1|2S|A|1369
3J6X|1|2S|G|1370
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 53
- 60S ribosomal protein L13
- Chain 58
- 60S ribosomal protein L18
- Chain 5S
- 5S ribosomal RNA; 5S rRNA
- Chain 61
- 60S ribosomal protein L21
- Chain 68
- 60S ribosomal protein L28
- Chain 69
- 60S ribosomal protein L29
- Chain 72
- 60S ribosomal protein L32
- Chain 73
- 60S ribosomal protein L33
- Chain L4
- 60S ribosomal protein L4
- Chain L7
- 60S ribosomal protein L7
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