3D structure

PDB id
3J77 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.2 Å

Loop

Sequence
CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
Length
31 nucleotides
Bulged bases
3J77|1|2S|G|1116
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3J77|1|2S|C|949
3J77|1|2S|G|950
3J77|1|2S|A|951
3J77|1|2S|A|952
3J77|1|2S|G|953
3J77|1|2S|U|954
*
3J77|1|2S|A|967
3J77|1|2S|G|968
*
3J77|1|2S|U|1114
3J77|1|2S|G|1115
3J77|1|2S|G|1116
3J77|1|2S|G|1117
*
3J77|1|2S|C|1141
3J77|1|2S|G|1142
3J77|1|2S|A|1143
3J77|1|2S|U|1144
3J77|1|2S|G|1145
3J77|1|2S|C|1146
*
3J77|1|2S|G|1157
3J77|1|2S|A|1158
3J77|1|2S|A|1159
3J77|1|2S|C|1160
3J77|1|2S|G|1161
*
3J77|1|2S|C|1338
3J77|1|2S|C|1339
*
3J77|1|2S|G|1365
3J77|1|2S|A|1366
3J77|1|2S|G|1367
3J77|1|2S|U|1368
3J77|1|2S|A|1369
3J77|1|2S|G|1370

Current chains

Chain 2S
25S ribosomal RNA

Nearby chains

Chain 5S
5S ribosomal RNA; 5S rRNA
Chain 63
60S ribosomal protein L13
Chain 68
60S ribosomal protein L18
Chain 71
60S ribosomal protein L21
Chain 78
60S ribosomal protein L28
Chain 79
60S ribosomal protein L29
Chain 82
60S ribosomal protein L32
Chain 83
60S ribosomal protein L33
Chain L4
60S ribosomal protein L4
Chain L7
60S ribosomal protein L7

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