3D structure

PDB id
3J79 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGAAAGA*UCG*UGGG*CGAUGA*UAACG*CC*GAGUAG
Length
33 nucleotides
Bulged bases
3J79|1|A|G|1244
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3J79|1|A|C|1068
3J79|1|A|G|1069
3J79|1|A|A|1070
3J79|1|A|A|1071
3J79|1|A|A|1072
3J79|1|A|G|1073
3J79|1|A|A|1074
*
3J79|1|A|U|1085
3J79|1|A|C|1086
3J79|1|A|G|1087
*
3J79|1|A|U|1242
3J79|1|A|G|1243
3J79|1|A|G|1244
3J79|1|A|G|1245
*
3J79|1|A|C|1269
3J79|1|A|G|1270
3J79|1|A|A|1271
3J79|1|A|U|1272
3J79|1|A|G|1273
3J79|1|A|A|1274
*
3J79|1|A|U|1285
3J79|1|A|A|1286
3J79|1|A|A|1287
3J79|1|A|C|1288
3J79|1|A|G|1289
*
3J79|1|A|C|1466
3J79|1|A|C|1467
*
3J79|1|A|G|1514
3J79|1|A|A|1515
3J79|1|A|G|1516
3J79|1|A|U|1517
3J79|1|A|A|1518
3J79|1|A|G|1519

Current chains

Chain A
28S ribosomal RNA

Nearby chains

Chain 4
60S ribosomal protein eL29
Chain 5
60S ribosomal protein uL30
Chain 8
60S ribosomal protein eL32
Chain 9
60S ribosomal protein eL33
Chain B
5S ribosomal RNA; 5S rRNA
Chain F
60S ribosomal protein uL4
Chain L
60S ribosomal protein eL13
Chain O
60S ribosomal protein uL15
Chain S
60S ribosomal protein eL18
Chain V
60S ribosomal protein eL21

Coloring options:

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