J7_3J79_001
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAAGA*UCG*UGGG*CGAUGA*UAACG*CC*GAGUAG
- Length
- 33 nucleotides
- Bulged bases
- 3J79|1|A|G|1244
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J79|1|A|C|1068
3J79|1|A|G|1069
3J79|1|A|A|1070
3J79|1|A|A|1071
3J79|1|A|A|1072
3J79|1|A|G|1073
3J79|1|A|A|1074
*
3J79|1|A|U|1085
3J79|1|A|C|1086
3J79|1|A|G|1087
*
3J79|1|A|U|1242
3J79|1|A|G|1243
3J79|1|A|G|1244
3J79|1|A|G|1245
*
3J79|1|A|C|1269
3J79|1|A|G|1270
3J79|1|A|A|1271
3J79|1|A|U|1272
3J79|1|A|G|1273
3J79|1|A|A|1274
*
3J79|1|A|U|1285
3J79|1|A|A|1286
3J79|1|A|A|1287
3J79|1|A|C|1288
3J79|1|A|G|1289
*
3J79|1|A|C|1466
3J79|1|A|C|1467
*
3J79|1|A|G|1514
3J79|1|A|A|1515
3J79|1|A|G|1516
3J79|1|A|U|1517
3J79|1|A|A|1518
3J79|1|A|G|1519
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain 4
- 60S ribosomal protein eL29
- Chain 5
- 60S ribosomal protein uL30
- Chain 8
- 60S ribosomal protein eL32
- Chain 9
- 60S ribosomal protein eL33
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 60S ribosomal protein uL4
- Chain L
- 60S ribosomal protein eL13
- Chain O
- 60S ribosomal protein uL15
- Chain S
- 60S ribosomal protein eL18
- Chain V
- 60S ribosomal protein eL21
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