J7_3J9W_001

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAGAAAG*UACAAGU*AUAGUA*UUAC*GCGCAG*CC*GAC

Length

37 nucleotides

Bulged bases

3J9W|1|BA|G|576, 3J9W|1|BA|G|2050

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J9W|1|BA|G|7
3J9W|1|BA|U|8
3J9W|1|BA|U|9
3J9W|1|BA|A|10
3J9W|1|BA|G|11
3J9W|1|BA|A|12
3J9W|1|BA|A|13
3J9W|1|BA|A|14
3J9W|1|BA|G|15
*
3J9W|1|BA|U|571
3J9W|1|BA|A|572
3J9W|1|BA|C|573
3J9W|1|BA|A|574
3J9W|1|BA|A|575
3J9W|1|BA|G|576
3J9W|1|BA|U|577
*
3J9W|1|BA|A|2047
3J9W|1|BA|U|2048
3J9W|1|BA|A|2049
3J9W|1|BA|G|2050
3J9W|1|BA|U|2051
3J9W|1|BA|A|2052
*
3J9W|1|BA|U|2069
3J9W|1|BA|U|2070
3J9W|1|BA|A|2071
3J9W|1|BA|C|2072
*
3J9W|1|BA|G|2654
3J9W|1|BA|C|2655
3J9W|1|BA|G|2656
3J9W|1|BA|C|2657
3J9W|1|BA|A|2658
3J9W|1|BA|G|2659
*
3J9W|1|BA|C|2817
3J9W|1|BA|C|2818
*
3J9W|1|BA|G|2918
3J9W|1|BA|A|2919
3J9W|1|BA|C|2920

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein bL32

Chain BE

50S ribosomal protein uL3

Chain BM

50S ribosomal protein uL13

Chain BT

50S ribosomal protein bL20

Chain BV

50S ribosomal protein uL22