J7_3J9W_002
3D structure
- PDB id
- 3J9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAAAU*AG*UCAG*CGAAAG*CAGAC*GA*UGGUAG
- Length
- 31 nucleotides
- Bulged bases
- 3J9W|1|BA|C|990, 3J9W|1|BA|A|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J9W|1|BA|C|864
3J9W|1|BA|G|865
3J9W|1|BA|A|866
3J9W|1|BA|A|867
3J9W|1|BA|A|868
3J9W|1|BA|U|869
*
3J9W|1|BA|A|882
3J9W|1|BA|G|883
*
3J9W|1|BA|U|989
3J9W|1|BA|C|990
3J9W|1|BA|A|991
3J9W|1|BA|G|992
*
3J9W|1|BA|C|1017
3J9W|1|BA|G|1018
3J9W|1|BA|A|1019
3J9W|1|BA|A|1020
3J9W|1|BA|A|1021
3J9W|1|BA|G|1022
*
3J9W|1|BA|C|1033
3J9W|1|BA|A|1034
3J9W|1|BA|G|1035
3J9W|1|BA|A|1036
3J9W|1|BA|C|1037
*
3J9W|1|BA|G|1209
3J9W|1|BA|A|1210
*
3J9W|1|BA|U|1226
3J9W|1|BA|G|1227
3J9W|1|BA|G|1228
3J9W|1|BA|U|1229
3J9W|1|BA|A|1230
3J9W|1|BA|G|1231
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B2
- 50S ribosomal protein uL30
- Chain B7
- 50S ribosomal protein bL35
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain BO
- 50S ribosomal protein uL15
- Chain BT
- 50S ribosomal protein bL20
- Chain BU
- 50S ribosomal protein bL21
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