3D structure

PDB id
3JBO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
5.8 Å

Loop

Sequence
CGAAAGA*UCG*UGGG*CGAUGA*UAACG*CC*GAGUAG
Length
33 nucleotides
Bulged bases
3JBO|1|AA|G|1244, 3JBO|1|AA|G|1273, 3JBO|1|AA|C|1288
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JBO|1|AA|C|1068
3JBO|1|AA|G|1069
3JBO|1|AA|A|1070
3JBO|1|AA|A|1071
3JBO|1|AA|A|1072
3JBO|1|AA|G|1073
3JBO|1|AA|A|1074
*
3JBO|1|AA|U|1085
3JBO|1|AA|C|1086
3JBO|1|AA|G|1087
*
3JBO|1|AA|U|1242
3JBO|1|AA|G|1243
3JBO|1|AA|G|1244
3JBO|1|AA|G|1245
*
3JBO|1|AA|C|1269
3JBO|1|AA|G|1270
3JBO|1|AA|A|1271
3JBO|1|AA|U|1272
3JBO|1|AA|G|1273
3JBO|1|AA|A|1274
*
3JBO|1|AA|U|1285
3JBO|1|AA|A|1286
3JBO|1|AA|A|1287
3JBO|1|AA|C|1288
3JBO|1|AA|G|1289
*
3JBO|1|AA|C|1466
3JBO|1|AA|C|1467
*
3JBO|1|AA|G|1514
3JBO|1|AA|A|1515
3JBO|1|AA|G|1516
3JBO|1|AA|U|1517
3JBO|1|AA|A|1518
3JBO|1|AA|G|1519

Current chains

Chain AA
28S ribosomal RNA

Nearby chains

Chain A4
60S ribosomal protein eL29
Chain A5
60S ribosomal protein uL30
Chain A8
60S ribosomal protein eL32
Chain A9
60S ribosomal protein eL33
Chain AB
5S ribosomal RNA; 5S rRNA
Chain AF
60S ribosomal protein uL4
Chain AL
60S ribosomal protein eL13
Chain AO
60S ribosomal protein uL15
Chain AS
60S ribosomal protein eL18
Chain AV
60S ribosomal protein eL21

Coloring options:

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