J7_3JCS_001
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GCUUA*UU*AUGUAG
- Length
- 31 nucleotides
- Bulged bases
- 3JCS|1|1|G|1173, 3JCS|1|1|U|1201, 3JCS|1|1|U|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JCS|1|1|C|1000
3JCS|1|1|G|1001
3JCS|1|1|A|1002
3JCS|1|1|A|1003
3JCS|1|1|G|1004
3JCS|1|1|U|1005
*
3JCS|1|1|A|1018
3JCS|1|1|G|1019
*
3JCS|1|1|U|1171
3JCS|1|1|G|1172
3JCS|1|1|G|1173
3JCS|1|1|G|1174
*
3JCS|1|1|C|1198
3JCS|1|1|G|1199
3JCS|1|1|A|1200
3JCS|1|1|U|1201
3JCS|1|1|G|1202
3JCS|1|1|C|1203
*
3JCS|1|1|G|1214
3JCS|1|1|C|1215
3JCS|1|1|U|1216
3JCS|1|1|U|1217
3JCS|1|1|A|1218
*
3JCS|1|1|U|1408
3JCS|1|1|U|1409
*
3JCS|1|1|A|1456
3JCS|1|1|U|1457
3JCS|1|1|G|1458
3JCS|1|1|U|1459
3JCS|1|1|A|1460
3JCS|1|1|G|1461
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain 8
- 5S ribosomal RNA; 5S rRNA
- Chain I
- ribosomal protein L13e
- Chain L
- ribosomal protein L15
- Chain P
- ribosomal protein L18e
- Chain S
- ribosomal protein L21e
- Chain b
- ribosomal protein L29e
- Chain c
- ribosomal protein L30
- Chain f
- ribosomal protein L32e
- Chain g
- ribosomal protein L33e
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