J7_4CXE_001

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CGAAGUUU*AUAG*UGGG*CGCUGC*GAACG*CC*GAGUAG

Length

35 nucleotides

Bulged bases

4CXE|1|2|G|1832

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4CXE|1|2|C|1645
4CXE|1|2|G|1646
4CXE|1|2|A|1647
4CXE|1|2|A|1648
4CXE|1|2|G|1649
4CXE|1|2|U|1650
4CXE|1|2|U|1651
4CXE|1|2|U|1652
*
4CXE|1|2|A|1661
4CXE|1|2|U|1662
4CXE|1|2|A|1663
4CXE|1|2|G|1664
*
4CXE|1|2|U|1830
4CXE|1|2|G|1831
4CXE|1|2|G|1832
4CXE|1|2|G|1833
*
4CXE|1|2|C|1857
4CXE|1|2|G|1858
4CXE|1|2|C|1859
4CXE|1|2|U|1860
4CXE|1|2|G|1861
4CXE|1|2|C|1862
*
4CXE|1|2|G|1873
4CXE|1|2|A|1874
4CXE|1|2|A|1875
4CXE|1|2|C|1876
4CXE|1|2|G|1877
*
4CXE|1|2|C|2055
4CXE|1|2|C|2056
*
4CXE|1|2|G|2254
4CXE|1|2|A|2255
4CXE|1|2|G|2256
4CXE|1|2|U|2257
4CXE|1|2|A|2258
4CXE|1|2|G|2259

Current chains

Chain 2

28S RRNA

Nearby chains

Chain 4

5S ribosomal RNA; 5S rRNA