J7_4D5Y_001
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CGAAGUUU*AUAG*UGGG*CGCUGC*GAACG*CC*GAGUAG
- Length
- 35 nucleotides
- Bulged bases
- 4D5Y|1|2|G|1832
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D5Y|1|2|C|1645
4D5Y|1|2|G|1646
4D5Y|1|2|A|1647
4D5Y|1|2|A|1648
4D5Y|1|2|G|1649
4D5Y|1|2|U|1650
4D5Y|1|2|U|1651
4D5Y|1|2|U|1652
*
4D5Y|1|2|A|1661
4D5Y|1|2|U|1662
4D5Y|1|2|A|1663
4D5Y|1|2|G|1664
*
4D5Y|1|2|U|1830
4D5Y|1|2|G|1831
4D5Y|1|2|G|1832
4D5Y|1|2|G|1833
*
4D5Y|1|2|C|1857
4D5Y|1|2|G|1858
4D5Y|1|2|C|1859
4D5Y|1|2|U|1860
4D5Y|1|2|G|1861
4D5Y|1|2|C|1862
*
4D5Y|1|2|G|1873
4D5Y|1|2|A|1874
4D5Y|1|2|A|1875
4D5Y|1|2|C|1876
4D5Y|1|2|G|1877
*
4D5Y|1|2|C|2055
4D5Y|1|2|C|2056
*
4D5Y|1|2|G|2254
4D5Y|1|2|A|2255
4D5Y|1|2|G|2256
4D5Y|1|2|U|2257
4D5Y|1|2|A|2258
4D5Y|1|2|G|2259
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain 4
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 60S RIBOSOMAL PROTEIN UL30
- Chain Q
- 60S RIBOSOMAL PROTEIN EL18
- Chain T
- 60S RIBOSOMAL PROTEIN EL21
- Chain a
- 60S RIBOSOMAL PROTEIN UL15
- Chain b
- 60S RIBOSOMAL PROTEIN EL29
- Chain e
- 60S RIBOSOMAL PROTEIN EL32
- Chain f
- 60S RIBOSOMAL PROTEIN EL33
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