J7_4D67_001

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CGAAGUUU*AUAG*UGGG*CGCUGC*GAACG*CC*GAGUAG

Length

35 nucleotides

Bulged bases

4D67|1|2|G|1832

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|C|1645
4D67|1|2|G|1646
4D67|1|2|A|1647
4D67|1|2|A|1648
4D67|1|2|G|1649
4D67|1|2|U|1650
4D67|1|2|U|1651
4D67|1|2|U|1652
*
4D67|1|2|A|1661
4D67|1|2|U|1662
4D67|1|2|A|1663
4D67|1|2|G|1664
*
4D67|1|2|U|1830
4D67|1|2|G|1831
4D67|1|2|G|1832
4D67|1|2|G|1833
*
4D67|1|2|C|1857
4D67|1|2|G|1858
4D67|1|2|C|1859
4D67|1|2|U|1860
4D67|1|2|G|1861
4D67|1|2|C|1862
*
4D67|1|2|G|1873
4D67|1|2|A|1874
4D67|1|2|A|1875
4D67|1|2|C|1876
4D67|1|2|G|1877
*
4D67|1|2|C|2055
4D67|1|2|C|2056
*
4D67|1|2|G|2254
4D67|1|2|A|2255
4D67|1|2|G|2256
4D67|1|2|U|2257
4D67|1|2|A|2258
4D67|1|2|G|2259

Current chains

Chain 2

28S RRNA

Nearby chains

Chain 4

5S ribosomal RNA; 5S rRNA

Chain F

60S RIBOSOMAL PROTEIN L7

Chain Q

60S RIBOSOMAL PROTEIN L18

Chain T

60S RIBOSOMAL PROTEIN L21

Chain a

60S RIBOSOMAL PROTEIN L27A

Chain b

60S RIBOSOMAL PROTEIN L29

Chain e

60S RIBOSOMAL PROTEIN L32

Chain f

60S RIBOSOMAL PROTEIN L35A