J7_4IOA_001

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUAGUAAG*UACAAGC*GAAUUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

4IOA|1|X|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J7_30280.1

Basepair signature

cWW-tWH-cWW-F-F-cWW-tWH-cSH-F-cWW-F-F-tSS-cWW-F-F-F-tHW-cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4IOA|1|X|A|8
4IOA|1|X|U|9
4IOA|1|X|A|10
4IOA|1|X|G|11
4IOA|1|X|U|12
4IOA|1|X|A|13
4IOA|1|X|A|14
4IOA|1|X|G|15
*
4IOA|1|X|U|535
4IOA|1|X|A|536
4IOA|1|X|C|537
4IOA|1|X|A|538
4IOA|1|X|A|539
4IOA|1|X|G|540
4IOA|1|X|C|541
*
4IOA|1|X|G|2001
4IOA|1|X|A|2002
4IOA|1|X|A|2003
4IOA|1|X|U|2004
4IOA|1|X|U|2005
4IOA|1|X|G|2006
*
4IOA|1|X|C|2023
4IOA|1|X|U|2024
4IOA|1|X|A|2025
4IOA|1|X|C|2026
*
4IOA|1|X|G|2604
4IOA|1|X|C|2605
4IOA|1|X|G|2606
4IOA|1|X|C|2607
4IOA|1|X|A|2608
4IOA|1|X|G|2609
*
4IOA|1|X|C|2768
4IOA|1|X|C|2769
*
4IOA|1|X|G|2868
4IOA|1|X|U|2869

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32