J7_4UJC_001

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGAAGUUU*AUAG*UGGG*CGCUGC*GAACG*CC*GAGUAG

Length

35 nucleotides

Bulged bases

4UJC|1|A2|G|1832

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|C|1645
4UJC|1|A2|G|1646
4UJC|1|A2|A|1647
4UJC|1|A2|A|1648
4UJC|1|A2|G|1649
4UJC|1|A2|U|1650
4UJC|1|A2|U|1651
4UJC|1|A2|U|1652
*
4UJC|1|A2|A|1661
4UJC|1|A2|U|1662
4UJC|1|A2|A|1663
4UJC|1|A2|G|1664
*
4UJC|1|A2|U|1830
4UJC|1|A2|G|1831
4UJC|1|A2|G|1832
4UJC|1|A2|G|1833
*
4UJC|1|A2|C|1857
4UJC|1|A2|G|1858
4UJC|1|A2|C|1859
4UJC|1|A2|U|1860
4UJC|1|A2|G|1861
4UJC|1|A2|C|1862
*
4UJC|1|A2|G|1873
4UJC|1|A2|A|1874
4UJC|1|A2|A|1875
4UJC|1|A2|C|1876
4UJC|1|A2|G|1877
*
4UJC|1|A2|C|2055
4UJC|1|A2|C|2056
*
4UJC|1|A2|G|2254
4UJC|1|A2|A|2255
4UJC|1|A2|G|2256
4UJC|1|A2|U|2257
4UJC|1|A2|A|2258
4UJC|1|A2|G|2259

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain A4

5S ribosomal RNA; 5S rRNA

Chain BF

60S RIBOSOMAL PROTEIN L7

Chain BQ

60S RIBOSOMAL PROTEIN L18

Chain BT

60S RIBOSOMAL PROTEIN L21

Chain Ba

60S RIBOSOMAL PROTEIN L27A

Chain Bb

60S RIBOSOMAL PROTEIN L29

Chain Be

60S RIBOSOMAL PROTEIN L32

Chain Bf

60S RIBOSOMAL PROTEIN L35A