J7_4UJD_001

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CGAAGUUU*AUAG*UGGG*CGCUGC*GAACG*CC*GAGUAG

Length

35 nucleotides

Bulged bases

4UJD|1|A2|G|1832

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|C|1645
4UJD|1|A2|G|1646
4UJD|1|A2|A|1647
4UJD|1|A2|A|1648
4UJD|1|A2|G|1649
4UJD|1|A2|U|1650
4UJD|1|A2|U|1651
4UJD|1|A2|U|1652
*
4UJD|1|A2|A|1661
4UJD|1|A2|U|1662
4UJD|1|A2|A|1663
4UJD|1|A2|G|1664
*
4UJD|1|A2|U|1830
4UJD|1|A2|G|1831
4UJD|1|A2|G|1832
4UJD|1|A2|G|1833
*
4UJD|1|A2|C|1857
4UJD|1|A2|G|1858
4UJD|1|A2|C|1859
4UJD|1|A2|U|1860
4UJD|1|A2|G|1861
4UJD|1|A2|C|1862
*
4UJD|1|A2|G|1873
4UJD|1|A2|A|1874
4UJD|1|A2|A|1875
4UJD|1|A2|C|1876
4UJD|1|A2|G|1877
*
4UJD|1|A2|C|2055
4UJD|1|A2|C|2056
*
4UJD|1|A2|G|2254
4UJD|1|A2|A|2255
4UJD|1|A2|G|2256
4UJD|1|A2|U|2257
4UJD|1|A2|A|2258
4UJD|1|A2|G|2259

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A4

5S ribosomal RNA; 5S rRNA

Chain AF

60S RIBOSOMAL PROTEIN L7

Chain AQ

60S RIBOSOMAL PROTEIN L18

Chain AT

60S RIBOSOMAL PROTEIN L21

Chain Aa

60S RIBOSOMAL PROTEIN L27A

Chain Ab

60S RIBOSOMAL PROTEIN L29

Chain Ae

60S RIBOSOMAL PROTEIN L32

Chain Af

60S RIBOSOMAL PROTEIN L35A