3D structure

PDB id
4V49 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
8.7 Å

Loop

Sequence
CGAAAU*AG*UGAG*CGAGAG*CAGAC*GAUUC*GUCUGGUAG
Length
37 nucleotides
Bulged bases
4V49|1|B0|A|956, 4V49|1|B0|U|1199
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V49|1|B0|C|830
4V49|1|B0|G|831
4V49|1|B0|A|832
4V49|1|B0|A|833
4V49|1|B0|A|834
4V49|1|B0|U|835
*
4V49|1|B0|A|848
4V49|1|B0|G|849
*
4V49|1|B0|U|954
4V49|1|B0|G|955
4V49|1|B0|A|956
4V49|1|B0|G|957
*
4V49|1|B0|C|982
4V49|1|B0|G|983
4V49|1|B0|A|984
4V49|1|B0|G|985
4V49|1|B0|A|986
4V49|1|B0|G|987
*
4V49|1|B0|C|998
4V49|1|B0|A|999
4V49|1|B0|G|1000
4V49|1|B0|A|1001
4V49|1|B0|C|1002
*
4V49|1|B0|G|1174
4V49|1|B0|A|1175
4V49|1|B0|U|1176
4V49|1|B0|U|1177
4V49|1|B0|C|1178
*
4V49|1|B0|G|1196
4V49|1|B0|U|1197
4V49|1|B0|C|1198
4V49|1|B0|U|1199
4V49|1|B0|G|1200
4V49|1|B0|G|1201
4V49|1|B0|U|1202
4V49|1|B0|A|1203
4V49|1|B0|G|1204

Current chains

Chain B0
23S RIBOSOMAL RNA

Nearby chains

Chain B3
50S ribosomal protein L35
Chain B9
5S ribosomal RNA; 5S rRNA
Chain BJ
50S ribosomal protein L15
Chain BO
50S ribosomal protein L20
Chain BP
50S ribosomal protein L21
Chain BX
50S ribosomal protein L30

Coloring options:

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