3D structure

PDB id
4V4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.
Experimental method
X-RAY DIFFRACTION
Resolution
3.71 Å

Loop

Sequence
CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
Length
32 nucleotides
Bulged bases
4V4I|1|w|A|945, 4V4I|1|w|C|974|||B
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V4I|1|w|C|817
4V4I|1|w|G|818
4V4I|1|w|A|819
4V4I|1|w|A|820
4V4I|1|w|A|821
4V4I|1|w|U|822
*
4V4I|1|w|A|835
4V4I|1|w|G|836
*
4V4I|1|w|U|943
4V4I|1|w|G|944
4V4I|1|w|A|945
4V4I|1|w|G|946
*
4V4I|1|w|C|971
4V4I|1|w|G|972
4V4I|1|w|A|973
4V4I|1|w|G|974|||A
4V4I|1|w|C|974|||B
4V4I|1|w|G|975
4V4I|1|w|C|976
*
4V4I|1|w|G|987
4V4I|1|w|A|988
4V4I|1|w|G|989
4V4I|1|w|A|990
4V4I|1|w|C|991
*
4V4I|1|w|G|1163
4V4I|1|w|G|1164
*
4V4I|1|w|C|1185
4V4I|1|w|G|1186
4V4I|1|w|G|1187
4V4I|1|w|U|1188
4V4I|1|w|A|1189
4V4I|1|w|G|1190

Current chains

Chain w
23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain J
50S ribosomal protein L15
Chain O
50S ribosomal protein L20
Chain P
50S ribosomal protein L21
Chain X
50S ribosomal protein L30
Chain a
50S ribosomal protein L35
Chain x
5S ribosomal RNA; 5S rRNA

Coloring options:

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