J7_4V4P_002

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CGAAAU*AGCC*GAGUGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

37 nucleotides

Bulged bases

4V4P|1|AA|G|944, 4V4P|1|AA|A|945, 4V4P|1|AA|A|973, 4V4P|1|AA|G|974

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4P|1|AA|C|817
4V4P|1|AA|G|818
4V4P|1|AA|A|819
4V4P|1|AA|A|820
4V4P|1|AA|A|821
4V4P|1|AA|U|822
*
4V4P|1|AA|A|835
4V4P|1|AA|G|836
4V4P|1|AA|C|837
4V4P|1|AA|C|838
*
4V4P|1|AA|G|940
4V4P|1|AA|A|941
4V4P|1|AA|G|942
4V4P|1|AA|U|943
4V4P|1|AA|G|944
4V4P|1|AA|A|945
4V4P|1|AA|G|946
*
4V4P|1|AA|C|971
4V4P|1|AA|G|972
4V4P|1|AA|A|973
4V4P|1|AA|G|974
4V4P|1|AA|C|974|||A
4V4P|1|AA|G|975
4V4P|1|AA|C|976
*
4V4P|1|AA|G|987
4V4P|1|AA|A|988
4V4P|1|AA|G|989
4V4P|1|AA|A|990
4V4P|1|AA|C|991
*
4V4P|1|AA|G|1163
4V4P|1|AA|G|1164
*
4V4P|1|AA|C|1185
4V4P|1|AA|G|1186
4V4P|1|AA|G|1187
4V4P|1|AA|U|1188
4V4P|1|AA|A|1189
4V4P|1|AA|G|1190

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L20

Chain A2

50S ribosomal protein L21

Chain A8

50S ribosomal protein L35

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AX

50S ribosomal protein L30