J7_4V4S_002

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

CGAAAU*AGC*GUGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

34 nucleotides

Bulged bases

4V4S|1|BA|G|944, 4V4S|1|BA|A|945, 4V4S|1|BA|A|973, 4V4S|1|BA|G|974

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4S|1|BA|C|817
4V4S|1|BA|G|818
4V4S|1|BA|A|819
4V4S|1|BA|A|820
4V4S|1|BA|A|821
4V4S|1|BA|U|822
*
4V4S|1|BA|A|835
4V4S|1|BA|G|836
4V4S|1|BA|C|837
*
4V4S|1|BA|G|942
4V4S|1|BA|U|943
4V4S|1|BA|G|944
4V4S|1|BA|A|945
4V4S|1|BA|G|946
*
4V4S|1|BA|C|971
4V4S|1|BA|G|972
4V4S|1|BA|A|973
4V4S|1|BA|G|974
4V4S|1|BA|C|974|||A
4V4S|1|BA|G|975
4V4S|1|BA|C|976
*
4V4S|1|BA|G|987
4V4S|1|BA|A|988
4V4S|1|BA|G|989
4V4S|1|BA|A|990
4V4S|1|BA|C|991
*
4V4S|1|BA|G|1163
4V4S|1|BA|G|1164
*
4V4S|1|BA|C|1185
4V4S|1|BA|G|1186
4V4S|1|BA|G|1187
4V4S|1|BA|U|1188
4V4S|1|BA|A|1189
4V4S|1|BA|G|1190

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L30

Chain B8

50S ribosomal protein L35

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BU

50S ribosomal protein L20

Chain BV

50S ribosomal protein L21