J7_4V4V_001

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

4V4V|1|B0|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4V|1|B0|C|817
4V4V|1|B0|G|818
4V4V|1|B0|A|819
4V4V|1|B0|A|820
4V4V|1|B0|A|821
4V4V|1|B0|G|822
*
4V4V|1|B0|C|835
4V4V|1|B0|G|836
4V4V|1|B0|C|837
4V4V|1|B0|C|838
*
4V4V|1|B0|G|940
4V4V|1|B0|A|941
4V4V|1|B0|G|942
4V4V|1|B0|A|943
4V4V|1|B0|C|944
4V4V|1|B0|A|945
4V4V|1|B0|C|946
*
4V4V|1|B0|G|971
4V4V|1|B0|A|972
4V4V|1|B0|A|973
4V4V|1|B0|G|974
4V4V|1|B0|A|975
4V4V|1|B0|G|976
*
4V4V|1|B0|C|987
4V4V|1|B0|A|988
4V4V|1|B0|G|989
4V4V|1|B0|A|990
4V4V|1|B0|C|991
*
4V4V|1|B0|G|1163
4V4V|1|B0|C|1164
*
4V4V|1|B0|G|1185
4V4V|1|B0|G|1186
4V4V|1|B0|G|1187
4V4V|1|B0|U|1188
4V4V|1|B0|A|1189
4V4V|1|B0|G|1190

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain B9

5S ribosomal RNA; 5S rRNA

Chain BJ

50S ribosomal protein L15

Chain BO

50S RIBOSOMAL PROTEIN L20

Chain BX

50S ribosomal protein L30