J7_4V4W_002

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CCUUUACUAUAGCUUGACACUG*CUAAC*GGACAGUGUCUGGUGGGUAGUUUG*CU*AGCA*UCAUAGUGAUCCGGUG*CAUCGUCAACGGAAAAGG

Length

91 nucleotides

Bulged bases

4V4W|1|B0|U|2076, 4V4W|1|B0|U|2092, 4V4W|1|B0|A|2198, 4V4W|1|B0|A|2388, 4V4W|1|B0|A|2425, 4V4W|1|B0|A|2426, 4V4W|1|B0|G|2428, 4V4W|1|B0|A|2430, 4V4W|1|B0|A|2433, 4V4W|1|B0|A|2434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|C|2072
4V4W|1|B0|C|2073
4V4W|1|B0|U|2074
4V4W|1|B0|U|2075
4V4W|1|B0|U|2076
4V4W|1|B0|A|2077
4V4W|1|B0|C|2078
4V4W|1|B0|U|2079
4V4W|1|B0|A|2080
4V4W|1|B0|U|2081
4V4W|1|B0|A|2082
4V4W|1|B0|G|2083
4V4W|1|B0|C|2084
4V4W|1|B0|U|2085
4V4W|1|B0|U|2086
4V4W|1|B0|G|2087
4V4W|1|B0|A|2088
4V4W|1|B0|C|2089
4V4W|1|B0|A|2090
4V4W|1|B0|C|2091
4V4W|1|B0|U|2092
4V4W|1|B0|G|2093
*
4V4W|1|B0|C|2196
4V4W|1|B0|U|2197
4V4W|1|B0|A|2198
4V4W|1|B0|A|2199
4V4W|1|B0|C|2200
*
4V4W|1|B0|G|2223
4V4W|1|B0|G|2224
4V4W|1|B0|A|2225
4V4W|1|B0|C|2226
4V4W|1|B0|A|2227
4V4W|1|B0|G|2228
4V4W|1|B0|U|2229
4V4W|1|B0|G|2230
4V4W|1|B0|U|2231
4V4W|1|B0|C|2232
4V4W|1|B0|U|2233
4V4W|1|B0|G|2234
4V4W|1|B0|G|2235
4V4W|1|B0|U|2236
4V4W|1|B0|G|2237
4V4W|1|B0|G|2238
4V4W|1|B0|G|2239
4V4W|1|B0|U|2240
4V4W|1|B0|A|2241
4V4W|1|B0|G|2242
4V4W|1|B0|U|2243
4V4W|1|B0|U|2244
4V4W|1|B0|U|2245
4V4W|1|B0|G|2246
*
4V4W|1|B0|C|2258
4V4W|1|B0|U|2259
*
4V4W|1|B0|A|2281
4V4W|1|B0|G|2282
4V4W|1|B0|C|2283
4V4W|1|B0|A|2284
*
4V4W|1|B0|U|2384
4V4W|1|B0|C|2385
4V4W|1|B0|A|2386
4V4W|1|B0|U|2387
4V4W|1|B0|A|2388
4V4W|1|B0|G|2389
4V4W|1|B0|U|2390
4V4W|1|B0|G|2391
4V4W|1|B0|A|2392
4V4W|1|B0|U|2393
4V4W|1|B0|C|2394
4V4W|1|B0|C|2395
4V4W|1|B0|G|2396
4V4W|1|B0|G|2397
4V4W|1|B0|U|2398
4V4W|1|B0|G|2399
*
4V4W|1|B0|C|2417
4V4W|1|B0|A|2418
4V4W|1|B0|U|2419
4V4W|1|B0|C|2420
4V4W|1|B0|G|2421
4V4W|1|B0|U|2423
4V4W|1|B0|C|2424
4V4W|1|B0|A|2425
4V4W|1|B0|A|2426
4V4W|1|B0|C|2427
4V4W|1|B0|G|2428
4V4W|1|B0|G|2429
4V4W|1|B0|A|2430
4V4W|1|B0|A|2433
4V4W|1|B0|A|2434
4V4W|1|B0|A|2435
4V4W|1|B0|G|2436
4V4W|1|B0|G|2437

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain B1

50S ribosomal protein L33

Chain BA

50S ribosomal protein L2

Chain BF

50S ribosomal protein L9

Chain BJ

50S ribosomal protein L15

Chain BU

50S ribosomal protein L27