J7_4V4W_003
3D structure
- PDB id
- 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- CGAAAG*CGCCUCGUGAAUCAUCUCCG*CGGAGAUGUUAUCACGGGAGACAC*GAAGAG*CAGAC*GCAG*UUGGGUAG
- Length
- 73 nucleotides
- Bulged bases
- 4V4W|1|B0|C|851, 4V4W|1|B0|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V4W|1|B0|C|817
4V4W|1|B0|G|818
4V4W|1|B0|A|819
4V4W|1|B0|A|820
4V4W|1|B0|A|821
4V4W|1|B0|G|822
*
4V4W|1|B0|C|835
4V4W|1|B0|G|836
4V4W|1|B0|C|837
4V4W|1|B0|C|838
4V4W|1|B0|U|839
4V4W|1|B0|C|840
4V4W|1|B0|G|841
4V4W|1|B0|U|842
4V4W|1|B0|G|843
4V4W|1|B0|A|844
4V4W|1|B0|A|845
4V4W|1|B0|U|846
4V4W|1|B0|C|848
4V4W|1|B0|A|849
4V4W|1|B0|U|850
4V4W|1|B0|C|851
4V4W|1|B0|U|852
4V4W|1|B0|C|853
4V4W|1|B0|C|854
4V4W|1|B0|G|855
*
4V4W|1|B0|C|922
4V4W|1|B0|G|923
4V4W|1|B0|G|924
4V4W|1|B0|A|925
4V4W|1|B0|G|926
4V4W|1|B0|A|928
4V4W|1|B0|U|929
4V4W|1|B0|G|930
4V4W|1|B0|U|931
4V4W|1|B0|U|932
4V4W|1|B0|A|933
4V4W|1|B0|U|934
4V4W|1|B0|C|935
4V4W|1|B0|A|936
4V4W|1|B0|C|937
4V4W|1|B0|G|938
4V4W|1|B0|G|939
4V4W|1|B0|G|940
4V4W|1|B0|A|941
4V4W|1|B0|G|942
4V4W|1|B0|A|943
4V4W|1|B0|C|944
4V4W|1|B0|A|945
4V4W|1|B0|C|946
*
4V4W|1|B0|G|971
4V4W|1|B0|A|972
4V4W|1|B0|A|973
4V4W|1|B0|G|974
4V4W|1|B0|A|975
4V4W|1|B0|G|976
*
4V4W|1|B0|C|987
4V4W|1|B0|A|988
4V4W|1|B0|G|989
4V4W|1|B0|A|990
4V4W|1|B0|C|991
*
4V4W|1|B0|G|1163
4V4W|1|B0|C|1164
4V4W|1|B0|A|1165
4V4W|1|B0|G|1166
*
4V4W|1|B0|U|1183
4V4W|1|B0|U|1184
4V4W|1|B0|G|1185
4V4W|1|B0|G|1186
4V4W|1|B0|G|1187
4V4W|1|B0|U|1188
4V4W|1|B0|A|1189
4V4W|1|B0|G|1190
Current chains
- Chain B0
- 23S ribosomal RNA
Nearby chains
- Chain B9
- 5S ribosomal RNA; 5S rRNA
- Chain BC
- 50S ribosomal protein L4
- Chain BJ
- 50S ribosomal protein L15
- Chain BO
- 50S ribosomal protein L20
- Chain BU
- 50S ribosomal protein L27
- Chain BX
- 50S ribosomal protein L30
Coloring options: