Loop J7_4V5B

3D structure

PDB id: 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of PDF binding helix in complex with the ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.74 Å

Loop

Sequence: CAAG*CGGACGGGUGAGUAAUGUC*GAUG*CUAG*CCACAC*GACU*AGGCAG
Length: 47 nucleotides
Bulged bases: 4V5B|1|BA|G|108, 4V5B|1|BA|A|109, 4V5B|1|BA|U|121, 4V5B|1|BA|C|352, 4V5B|1|BA|A|353
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V5B|1|BA|C|58
4V5B|1|BA|A|59
4V5B|1|BA|A|60
4V5B|1|BA|G|61
*
4V5B|1|BA|C|106
4V5B|1|BA|G|107
4V5B|1|BA|G|108
4V5B|1|BA|A|109
4V5B|1|BA|C|110
4V5B|1|BA|G|111
4V5B|1|BA|G|112
4V5B|1|BA|G|113
4V5B|1|BA|U|114
4V5B|1|BA|G|115
4V5B|1|BA|A|116
4V5B|1|BA|G|117
4V5B|1|BA|U|118
4V5B|1|BA|A|119
4V5B|1|BA|A|120
4V5B|1|BA|U|121
4V5B|1|BA|G|122
4V5B|1|BA|U|123
4V5B|1|BA|C|124
*
4V5B|1|BA|G|237
4V5B|1|BA|A|238
4V5B|1|BA|U|239
4V5B|1|BA|G|240
*
4V5B|1|BA|C|286
4V5B|1|BA|U|287
4V5B|1|BA|A|288
4V5B|1|BA|G|289
*
4V5B|1|BA|C|311
4V5B|1|BA|C|312
4V5B|1|BA|A|313
4V5B|1|BA|C|314
4V5B|1|BA|A|315
4V5B|1|BA|C|316
*
4V5B|1|BA|G|337
4V5B|1|BA|A|338
4V5B|1|BA|C|339
4V5B|1|BA|U|340
*
4V5B|1|BA|A|349
4V5B|1|BA|G|350
4V5B|1|BA|G|351
4V5B|1|BA|C|352
4V5B|1|BA|A|353
4V5B|1|BA|G|354

Current chains

Chain BA: 16S RIBOSOMAL RNA

Nearby chains

Chain AK: 50S RIBOSOMAL PROTEIN L14
Chain BP: 30S RIBOSOMAL PROTEIN S16
Chain BQ: 30S RIBOSOMAL PROTEIN S17
Chain BT: 30S RIBOSOMAL PROTEIN S20

J7_4V5B_001