J7_4V5B_002

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

4V5B|1|CB|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|CB|C|8
4V5B|1|CB|G|9
4V5B|1|CB|A|10
4V5B|1|CB|C|11
4V5B|1|CB|U|12
4V5B|1|CB|A|13
4V5B|1|CB|A|14
4V5B|1|CB|G|15
*
4V5B|1|CB|U|525
4V5B|1|CB|A|526
4V5B|1|CB|C|527
4V5B|1|CB|A|528
4V5B|1|CB|A|529
4V5B|1|CB|G|530
4V5B|1|CB|C|531
*
4V5B|1|CB|G|2018
4V5B|1|CB|A|2019
4V5B|1|CB|A|2020
4V5B|1|CB|C|2021
4V5B|1|CB|U|2022
4V5B|1|CB|C|2023
*
4V5B|1|CB|G|2040
4V5B|1|CB|U|2041
4V5B|1|CB|A|2042
4V5B|1|CB|C|2043
*
4V5B|1|CB|G|2625
4V5B|1|CB|C|2626
4V5B|1|CB|G|2627
4V5B|1|CB|C|2628
4V5B|1|CB|U|2629
4V5B|1|CB|G|2630
*
4V5B|1|CB|C|2788
4V5B|1|CB|C|2789
*
4V5B|1|CB|G|2894
4V5B|1|CB|G|2895

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain C0

50S RIBOSOMAL PROTEIN L32

Chain CD

50S RIBOSOMAL PROTEIN L3

Chain CJ

50S RIBOSOMAL PROTEIN L13

Chain CQ

50S RIBOSOMAL PROTEIN L20

Chain CS

50S RIBOSOMAL PROTEIN L22