J7_4V5B_003
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 36 nucleotides
- Bulged bases
- 4V5B|1|CB|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V5B|1|CB|C|817
4V5B|1|CB|G|818
4V5B|1|CB|A|819
4V5B|1|CB|A|820
4V5B|1|CB|A|821
4V5B|1|CB|G|822
*
4V5B|1|CB|C|835
4V5B|1|CB|G|836
4V5B|1|CB|C|837
4V5B|1|CB|C|838
*
4V5B|1|CB|G|940
4V5B|1|CB|A|941
4V5B|1|CB|G|942
4V5B|1|CB|A|943
4V5B|1|CB|C|944
4V5B|1|CB|A|945
4V5B|1|CB|C|946
*
4V5B|1|CB|G|971
4V5B|1|CB|A|972
4V5B|1|CB|A|973
4V5B|1|CB|G|974
4V5B|1|CB|A|975
4V5B|1|CB|G|976
*
4V5B|1|CB|C|987
4V5B|1|CB|A|988
4V5B|1|CB|G|989
4V5B|1|CB|A|990
4V5B|1|CB|C|991
*
4V5B|1|CB|G|1163
4V5B|1|CB|C|1164
*
4V5B|1|CB|G|1185
4V5B|1|CB|G|1186
4V5B|1|CB|G|1187
4V5B|1|CB|U|1188
4V5B|1|CB|A|1189
4V5B|1|CB|G|1190
Current chains
- Chain CB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain C3
- 50S RIBOSOMAL PROTEIN L35
- Chain CA
- 5S ribosomal RNA; 5S rRNA
- Chain CL
- 50S RIBOSOMAL PROTEIN L15
- Chain CQ
- 50S RIBOSOMAL PROTEIN L20
- Chain CR
- 50S RIBOSOMAL PROTEIN L21
- Chain CY
- 50S RIBOSOMAL PROTEIN L30
Coloring options: