Loop J7_4V5B

3D structure

PDB id: 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of PDF binding helix in complex with the ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.74 Å

Loop

Sequence: CAAG*CGGACGGGUGAGUAAUGUC*GAUG*CUAGCU*AGCCACAC*GACU*AGGCAG
Length: 51 nucleotides
Bulged bases: 4V5B|1|DA|A|109, 4V5B|1|DA|U|121, 4V5B|1|DA|C|352, 4V5B|1|DA|A|353
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V5B|1|DA|C|58
4V5B|1|DA|A|59
4V5B|1|DA|A|60
4V5B|1|DA|G|61
*
4V5B|1|DA|C|106
4V5B|1|DA|G|107
4V5B|1|DA|G|108
4V5B|1|DA|A|109
4V5B|1|DA|C|110
4V5B|1|DA|G|111
4V5B|1|DA|G|112
4V5B|1|DA|G|113
4V5B|1|DA|U|114
4V5B|1|DA|G|115
4V5B|1|DA|A|116
4V5B|1|DA|G|117
4V5B|1|DA|U|118
4V5B|1|DA|A|119
4V5B|1|DA|A|120
4V5B|1|DA|U|121
4V5B|1|DA|G|122
4V5B|1|DA|U|123
4V5B|1|DA|C|124
*
4V5B|1|DA|G|237
4V5B|1|DA|A|238
4V5B|1|DA|U|239
4V5B|1|DA|G|240
*
4V5B|1|DA|C|286
4V5B|1|DA|U|287
4V5B|1|DA|A|288
4V5B|1|DA|G|289
4V5B|1|DA|C|290
4V5B|1|DA|U|291
*
4V5B|1|DA|A|309
4V5B|1|DA|G|310
4V5B|1|DA|C|311
4V5B|1|DA|C|312
4V5B|1|DA|A|313
4V5B|1|DA|C|314
4V5B|1|DA|A|315
4V5B|1|DA|C|316
*
4V5B|1|DA|G|337
4V5B|1|DA|A|338
4V5B|1|DA|C|339
4V5B|1|DA|U|340
*
4V5B|1|DA|A|349
4V5B|1|DA|G|350
4V5B|1|DA|G|351
4V5B|1|DA|C|352
4V5B|1|DA|A|353
4V5B|1|DA|G|354

Current chains

Chain DA: 16S RIBOSOMAL RNA

Nearby chains

Chain AH: 50S RIBOSOMAL PROTEIN L9
Chain CK: 50S RIBOSOMAL PROTEIN L14
Chain DP: 30S RIBOSOMAL PROTEIN S16
Chain DQ: 30S RIBOSOMAL PROTEIN S17
Chain DT: 30S RIBOSOMAL PROTEIN S20

J7_4V5B_004