J7_4V5B_006

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CAAG*CGGACGGGUGAGUAAUGU*AUG*CUAG*CCACAC*GAC*GGCAG

Length

43 nucleotides

Bulged bases

4V5B|1|DA|A|109, 4V5B|1|DA|U|121, 4V5B|1|DA|C|352, 4V5B|1|DA|A|353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|DA|C|58
4V5B|1|DA|A|59
4V5B|1|DA|A|60
4V5B|1|DA|G|61
*
4V5B|1|DA|C|106
4V5B|1|DA|G|107
4V5B|1|DA|G|108
4V5B|1|DA|A|109
4V5B|1|DA|C|110
4V5B|1|DA|G|111
4V5B|1|DA|G|112
4V5B|1|DA|G|113
4V5B|1|DA|U|114
4V5B|1|DA|G|115
4V5B|1|DA|A|116
4V5B|1|DA|G|117
4V5B|1|DA|U|118
4V5B|1|DA|A|119
4V5B|1|DA|A|120
4V5B|1|DA|U|121
4V5B|1|DA|G|122
4V5B|1|DA|U|123
*
4V5B|1|DA|A|238
4V5B|1|DA|U|239
4V5B|1|DA|G|240
*
4V5B|1|DA|C|286
4V5B|1|DA|U|287
4V5B|1|DA|A|288
4V5B|1|DA|G|289
*
4V5B|1|DA|C|311
4V5B|1|DA|C|312
4V5B|1|DA|A|313
4V5B|1|DA|C|314
4V5B|1|DA|A|315
4V5B|1|DA|C|316
*
4V5B|1|DA|G|337
4V5B|1|DA|A|338
4V5B|1|DA|C|339
*
4V5B|1|DA|G|350
4V5B|1|DA|G|351
4V5B|1|DA|C|352
4V5B|1|DA|A|353
4V5B|1|DA|G|354

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain CK

50S RIBOSOMAL PROTEIN L14

Chain DP

30S RIBOSOMAL PROTEIN S16

Chain DQ

30S RIBOSOMAL PROTEIN S17

Chain DT

30S RIBOSOMAL PROTEIN S20