3D structure

PDB id
4V5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.
Experimental method
ELECTRON MICROSCOPY
Resolution
5.8 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
4V5H|1|BB|A|945
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V5H|1|BB|C|817
4V5H|1|BB|G|818
4V5H|1|BB|A|819
4V5H|1|BB|A|820
4V5H|1|BB|A|821
4V5H|1|BB|G|822
*
4V5H|1|BB|C|835
4V5H|1|BB|G|836
4V5H|1|BB|C|837
4V5H|1|BB|C|838
*
4V5H|1|BB|G|940
4V5H|1|BB|A|941
4V5H|1|BB|G|942
4V5H|1|BB|A|943
4V5H|1|BB|C|944
4V5H|1|BB|A|945
4V5H|1|BB|C|946
*
4V5H|1|BB|G|971
4V5H|1|BB|A|972
4V5H|1|BB|A|973
4V5H|1|BB|G|974
4V5H|1|BB|A|975
4V5H|1|BB|G|976
*
4V5H|1|BB|C|987
4V5H|1|BB|A|988
4V5H|1|BB|G|989
4V5H|1|BB|A|990
4V5H|1|BB|C|991
*
4V5H|1|BB|G|1163
4V5H|1|BB|C|1164
*
4V5H|1|BB|G|1185
4V5H|1|BB|G|1186
4V5H|1|BB|G|1187
4V5H|1|BB|U|1188
4V5H|1|BB|A|1189
4V5H|1|BB|G|1190

Current chains

Chain BB
23S RIBOSOMAL RNA

Nearby chains

Chain B2
50S RIBOSOMAL PROTEIN L30
Chain B7
50S RIBOSOMAL PROTEIN L35
Chain BA
5S ribosomal RNA; 5S rRNA
Chain BL
50S RIBOSOMAL PROTEIN L15
Chain BQ
50S RIBOSOMAL PROTEIN L20
Chain BR
50S RIBOSOMAL PROTEIN L21

Coloring options:

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