3D structure

PDB id
4V5M (explore in PDB, NAKB, or RNA 3D Hub)
Description
tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.8 Å

Loop

Sequence
CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
Length
32 nucleotides
Bulged bases
4V5M|1|BA|A|945, 4V5M|1|BA|C|975
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V5M|1|BA|C|817
4V5M|1|BA|G|818
4V5M|1|BA|A|819
4V5M|1|BA|A|820
4V5M|1|BA|A|821
4V5M|1|BA|U|822
*
4V5M|1|BA|A|835
4V5M|1|BA|G|836
*
4V5M|1|BA|U|943
4V5M|1|BA|G|944
4V5M|1|BA|A|945
4V5M|1|BA|G|946
*
4V5M|1|BA|C|971
4V5M|1|BA|G|972
4V5M|1|BA|A|973
4V5M|1|BA|G|974
4V5M|1|BA|C|975
4V5M|1|BA|G|975|||A
4V5M|1|BA|C|976
*
4V5M|1|BA|G|987
4V5M|1|BA|A|988
4V5M|1|BA|G|989
4V5M|1|BA|A|990
4V5M|1|BA|C|991
*
4V5M|1|BA|G|1163
4V5M|1|BA|G|1164
*
4V5M|1|BA|C|1185
4V5M|1|BA|G|1186
4V5M|1|BA|G|1187
4V5M|1|BA|U|1188
4V5M|1|BA|A|1189
4V5M|1|BA|G|1190

Current chains

Chain BA
23S RIBOSOMAL RNA

Nearby chains

Chain B3
50S RIBOSOMAL PROTEIN L30
Chain B8
50S RIBOSOMAL PROTEIN L35
Chain BB
5S ribosomal RNA; 5S rRNA
Chain BP
50S RIBOSOMAL PROTEIN L15
Chain BU
50S RIBOSOMAL PROTEIN L20
Chain BV
50S RIBOSOMAL PROTEIN L21

Coloring options:

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