Loop J7_4V65

3D structure

PDB id: 4V65 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the E. coli ribosome in the Pre-accommodation state
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å

Loop

Sequence: GCAAGUC*GGCGGACGGGUGAGUAAUGUC*GAUG*CUAGCU*AGCCACAC*GAC*GGCAGC
Length: 55 nucleotides
Bulged bases: 4V65|1|A1|A|109, 4V65|1|A1|U|114, 4V65|1|A1|G|115, 4V65|1|A1|A|116, 4V65|1|A1|G|117, 4V65|1|A1|U|118, 4V65|1|A1|U|121, 4V65|1|A1|A|238, 4V65|1|A1|G|289, 4V65|1|A1|C|352, 4V65|1|A1|A|353
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V65|1|A1|G|57
4V65|1|A1|C|58
4V65|1|A1|A|59
4V65|1|A1|A|60
4V65|1|A1|G|61
4V65|1|A1|U|62
4V65|1|A1|C|63
*
4V65|1|A1|G|104
4V65|1|A1|G|105
4V65|1|A1|C|106
4V65|1|A1|G|107
4V65|1|A1|G|108
4V65|1|A1|A|109
4V65|1|A1|C|110
4V65|1|A1|G|111
4V65|1|A1|G|112
4V65|1|A1|G|113
4V65|1|A1|U|114
4V65|1|A1|G|115
4V65|1|A1|A|116
4V65|1|A1|G|117
4V65|1|A1|U|118
4V65|1|A1|A|119
4V65|1|A1|A|120
4V65|1|A1|U|121
4V65|1|A1|G|122
4V65|1|A1|U|123
4V65|1|A1|C|124
*
4V65|1|A1|G|237
4V65|1|A1|A|238
4V65|1|A1|U|239
4V65|1|A1|G|240
*
4V65|1|A1|C|286
4V65|1|A1|U|287
4V65|1|A1|A|288
4V65|1|A1|G|289
4V65|1|A1|C|290
4V65|1|A1|U|291
*
4V65|1|A1|A|309
4V65|1|A1|G|310
4V65|1|A1|C|311
4V65|1|A1|C|312
4V65|1|A1|A|313
4V65|1|A1|C|314
4V65|1|A1|A|315
4V65|1|A1|C|316
*
4V65|1|A1|G|337
4V65|1|A1|A|338
4V65|1|A1|C|339
*
4V65|1|A1|G|350
4V65|1|A1|G|351
4V65|1|A1|C|352
4V65|1|A1|A|353
4V65|1|A1|G|354
4V65|1|A1|C|355

Current chains

Chain A1: 16S rRNA

Nearby chains

Chain AI: 30S ribosomal protein S16
Chain AJ: 30S ribosomal protein S17
Chain AN: 30S ribosomal protein S20
Chain BD: 50S ribosomal protein L14

J7_4V65_001