J7_4V6I_002
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 4V6I|1|DA|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6I|1|DA|C|949
4V6I|1|DA|G|950
4V6I|1|DA|A|951
4V6I|1|DA|A|952
4V6I|1|DA|G|953
4V6I|1|DA|U|954
*
4V6I|1|DA|A|967
4V6I|1|DA|G|968
*
4V6I|1|DA|U|1114
4V6I|1|DA|G|1115
4V6I|1|DA|G|1116
4V6I|1|DA|G|1117
*
4V6I|1|DA|C|1141
4V6I|1|DA|G|1142
4V6I|1|DA|A|1143
4V6I|1|DA|U|1144
4V6I|1|DA|G|1145
4V6I|1|DA|C|1146
*
4V6I|1|DA|G|1157
4V6I|1|DA|A|1158
4V6I|1|DA|A|1159
4V6I|1|DA|C|1160
4V6I|1|DA|G|1161
*
4V6I|1|DA|C|1338
4V6I|1|DA|C|1339
*
4V6I|1|DA|G|1365
4V6I|1|DA|A|1366
4V6I|1|DA|G|1367
4V6I|1|DA|U|1368
4V6I|1|DA|A|1369
4V6I|1|DA|G|1370
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BD
- 60S ribosomal protein rpL4 (L4p)
- Chain BO
- 60S ribosomal protein rpL28 (L15p)
- Chain BR
- 60S ribosomal protein rpL18 (L18e)
- Chain BU
- 60S ribosomal protein rpL21 (L21e)
- Chain Be
- 60S ribosomal protein rpL7 (L30p)
- Chain Bh
- 60S ribosomal protein pL32 (L32e)
- Chain Bj
- 60S ribosomal protein rpL33 (L35ae)
- Chain DC
- 5S ribosomal RNA; 5S rRNA
Coloring options: