J7_4V6K_002
3D structure
- PDB id
- 4V6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural insights into cognate vs. near-cognate discrimination during decoding.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.25 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CAUAAGUAACGAUAAAG*CUCG*CGCUU*AGUGAAAUUG
- Length
- 47 nucleotides
- Bulged bases
- 4V6K|1|AB|A|532, 4V6K|1|AB|U|562, 4V6K|1|AB|G|1271, 4V6K|1|AB|A|1272, 4V6K|1|AB|U|1273, 4V6K|1|AB|U|1647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6K|1|AB|C|531
4V6K|1|AB|A|532
4V6K|1|AB|G|533
*
4V6K|1|AB|C|560
4V6K|1|AB|G|561
4V6K|1|AB|U|562
4V6K|1|AB|A|563
4V6K|1|AB|C|564
*
4V6K|1|AB|G|577
4V6K|1|AB|G|578
4V6K|1|AB|G|579
*
4V6K|1|AB|C|1261
4V6K|1|AB|A|1262
4V6K|1|AB|U|1263
4V6K|1|AB|A|1264
4V6K|1|AB|A|1265
4V6K|1|AB|G|1266
4V6K|1|AB|U|1267
4V6K|1|AB|A|1268
4V6K|1|AB|A|1269
4V6K|1|AB|C|1270
4V6K|1|AB|G|1271
4V6K|1|AB|A|1272
4V6K|1|AB|U|1273
4V6K|1|AB|A|1274
4V6K|1|AB|A|1275
4V6K|1|AB|A|1276
4V6K|1|AB|G|1277
*
4V6K|1|AB|C|1293
4V6K|1|AB|U|1294
4V6K|1|AB|C|1295
4V6K|1|AB|G|1296
*
4V6K|1|AB|C|1644
4V6K|1|AB|G|1645
4V6K|1|AB|C|1646
4V6K|1|AB|U|1647
4V6K|1|AB|U|1648
*
4V6K|1|AB|A|2009
4V6K|1|AB|G|2010
4V6K|1|AB|U|2011
4V6K|1|AB|G|2012
4V6K|1|AB|A|2013
4V6K|1|AB|A|2014
4V6K|1|AB|A|2015
4V6K|1|AB|U|2016
4V6K|1|AB|U|2017
4V6K|1|AB|G|2018
Current chains
- Chain AB
- ribosomal RNA 23S
Nearby chains
- Chain AF
- 50S ribosomal protein L4
- Chain AK
- 50S ribosomal protein L13
- Chain AO
- 50S ribosomal protein L17
- Chain AR
- 50S ribosomal protein L20
- Chain AS
- 50S ribosomal protein L21
- Chain AT
- 50S ribosomal protein L22
- Chain Ac
- 50S ribosomal protein L32
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