J7_4V6L_001

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

4V6L|1|BB|A|945, 4V6L|1|BB|G|974

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6L|1|BB|C|817
4V6L|1|BB|G|818
4V6L|1|BB|A|819
4V6L|1|BB|A|820
4V6L|1|BB|A|821
4V6L|1|BB|G|822
*
4V6L|1|BB|C|835
4V6L|1|BB|G|836
4V6L|1|BB|C|837
4V6L|1|BB|C|838
*
4V6L|1|BB|G|940
4V6L|1|BB|A|941
4V6L|1|BB|G|942
4V6L|1|BB|A|943
4V6L|1|BB|C|944
4V6L|1|BB|A|945
4V6L|1|BB|C|946
*
4V6L|1|BB|G|971
4V6L|1|BB|A|972
4V6L|1|BB|A|973
4V6L|1|BB|G|974
4V6L|1|BB|A|975
4V6L|1|BB|G|976
*
4V6L|1|BB|C|987
4V6L|1|BB|A|988
4V6L|1|BB|G|989
4V6L|1|BB|A|990
4V6L|1|BB|C|991
*
4V6L|1|BB|G|1163
4V6L|1|BB|C|1164
*
4V6L|1|BB|G|1185
4V6L|1|BB|G|1186
4V6L|1|BB|G|1187
4V6L|1|BB|U|1188
4V6L|1|BB|A|1189
4V6L|1|BB|G|1190

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BM

50S ribosomal protein L15

Chain BR

50S ribosomal protein L20

Chain BS

50S ribosomal protein L21

Chain BX

50S ribosomal protein L27

Chain Ba

50S ribosomal protein L30

Chain Bf

50S ribosomal protein L35