3D structure

PDB id
4V6M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the ribosome-SecYE complex in the membrane environment
Experimental method
ELECTRON MICROSCOPY
Resolution
7.1 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
4V6M|1|B8|C|2021, 4V6M|1|B8|U|2022
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V6M|1|B8|C|8
4V6M|1|B8|G|9
4V6M|1|B8|A|10
4V6M|1|B8|C|11
4V6M|1|B8|U|12
4V6M|1|B8|A|13
4V6M|1|B8|A|14
4V6M|1|B8|G|15
*
4V6M|1|B8|U|525
4V6M|1|B8|A|526
4V6M|1|B8|C|527
4V6M|1|B8|A|528
4V6M|1|B8|A|529
4V6M|1|B8|G|530
4V6M|1|B8|C|531
*
4V6M|1|B8|G|2018
4V6M|1|B8|A|2019
4V6M|1|B8|A|2020
4V6M|1|B8|C|2021
4V6M|1|B8|U|2022
4V6M|1|B8|C|2023
*
4V6M|1|B8|G|2040
4V6M|1|B8|U|2041
4V6M|1|B8|A|2042
4V6M|1|B8|C|2043
*
4V6M|1|B8|G|2625
4V6M|1|B8|C|2626
4V6M|1|B8|G|2627
4V6M|1|B8|C|2628
4V6M|1|B8|U|2629
4V6M|1|B8|G|2630
*
4V6M|1|B8|C|2788
4V6M|1|B8|C|2789
*
4V6M|1|B8|G|2894
4V6M|1|B8|G|2895

Current chains

Chain B8
23S RIBOSOMAL RNA

Nearby chains

Chain B0
50S ribosomal protein L32
Chain BD
50S ribosomal protein L3
Chain BJ
50S ribosomal protein L13
Chain BQ
50S ribosomal protein L20
Chain BS
50S ribosomal protein L22

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.2907 s