J7_4V6N_003

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

4V6N|1|AB|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6N|1|AB|C|8
4V6N|1|AB|G|9
4V6N|1|AB|A|10
4V6N|1|AB|C|11
4V6N|1|AB|U|12
4V6N|1|AB|A|13
4V6N|1|AB|A|14
4V6N|1|AB|G|15
*
4V6N|1|AB|U|525
4V6N|1|AB|A|526
4V6N|1|AB|C|527
4V6N|1|AB|A|528
4V6N|1|AB|A|529
4V6N|1|AB|G|530
4V6N|1|AB|C|531
*
4V6N|1|AB|G|2018
4V6N|1|AB|A|2019
4V6N|1|AB|A|2020
4V6N|1|AB|C|2021
4V6N|1|AB|U|2022
4V6N|1|AB|C|2023
*
4V6N|1|AB|G|2040
4V6N|1|AB|U|2041
4V6N|1|AB|A|2042
4V6N|1|AB|C|2043
*
4V6N|1|AB|G|2625
4V6N|1|AB|C|2626
4V6N|1|AB|G|2627
4V6N|1|AB|C|2628
4V6N|1|AB|U|2629
4V6N|1|AB|G|2630
*
4V6N|1|AB|C|2788
4V6N|1|AB|C|2789
*
4V6N|1|AB|G|2894
4V6N|1|AB|G|2895

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L32

Chain AE

50S ribosomal protein L3

Chain AL

50S ribosomal protein L13

Chain AS

50S ribosomal protein L20

Chain AU

50S ribosomal protein L22